4IQV

Tdt core in complex with inhibitor 6-[4-(3-fluorobenzoyl)-1H-pyrrol-2-yl]-2-hydroxy-4-oxohexa-2,5-dienoic acid and ssDNA

Structural Biology Knowledgebase: 4IQV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.179

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IQV

Classification: TRANSFERASE / TRANSFERASE INHIBITOR / DNA

Total Structure Weight: 47206.44


Macromolecule Entities
Molecule Chains Length Organism Details
DNA nucleotidylexotransferase A 400 Mus musculus EC#: 2.7.7.31 IUBMB
Fragment: SEE REMARK 999
Mutation: L398A
Gene Name(s): Dntt Tdt
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*CP*CP*G)-3' C 4 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1FO
Query on 1FO

A 6-[4-(3-fluorobenzoyl)-1H-pyrrol-2-yl]-2- hydroxy-4-oxohexa-2,5-dienoic acid
C17 H12 F N O5
WQEAOCAOIXLGFY-OQLOTXMNSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.179
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.86 α = 90.00
b = 84.54 β = 90.00
c = 122.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-13
  • Released Date: 2013-09-04
  • Deposition author(s): Gouge, J., Delarue, M.

Revision History

  • 2013-10-09
    Type: Citation | Details: Citation update