4IOP

Crystal structure of NKp65 bound to its ligand KACL


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.252

Literature

Macromolecules
Sequence Display for 4IOP

Classification: IMMUNE SYSTEM

Total Structure Weight: 35452.37

Macromolecule Entities
Molecule Chains Length Organism Details
C-type lectin domain family 2 member A A 142 Homo sapiens Gene Name(s): CLEC2A Gene View KACL UNQ5792/PRO19597
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Killer cell lectin-like receptor subfamily F member 2 B 158 Homo sapiens Gene Name(s): KLRF2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.252
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 74.64 α = 90.00
b = 74.64 β = 90.00
c = 271.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-08
  • Released Date: 2013-07-17
  • Deposition author(s): Li, Y.

Revision History

  • Version 1_0: 2013-07-17

    Type: Initial release

  • Version 1_1: 2013-07-24

    Type: Data collection, Database references

  • Version 1_2: 2017-10-11

    Type: Data collection