4IOP

Crystal structure of NKp65 bound to its ligand KACL

  • Classification: IMMUNE SYSTEM
  • Deposited: 2013-01-08 Released: 2013-07-17
  • Deposition author(s): Li, Y.
  • Organism: Homo sapiens
  • Expression System: Spodoptera frugiperda, Spodoptera frugiperda

Structural Biology Knowledgebase: 4IOP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.252

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IOP

Classification: IMMUNE SYSTEM

Total Structure Weight: 35380.59

Macromolecule Entities
Molecule Chains Length Organism Details
C-type lectin domain family 2 member A A 142 Homo sapiens Gene Name(s): CLEC2A Gene View KACL UNQ5792/PRO19597
Killer cell lectin-like receptor subfamily F member 2 B 158 Homo sapiens Gene Name(s): KLRF2 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.297
  • R-Value Work: 0.252
  • Space Group: I 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.64 α = 90.00
b = 74.64 β = 90.00
c = 271.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-08
  • Released Date: 2013-07-17
  • Deposition author(s): Li, Y.

Revision History

  • 2013-07-24
    Type: Citation | Details: Citation update
  • 2013-07-24
    Type: Data collection | Details: Correct beamline