4IMF

Crystal Structure of Pasteurella multocida N-Acetyl-D-Neuraminic acid lyase K164 mutant complexed with N-Acetylneuraminic acid

Structural Biology Knowledgebase: 4IMF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.167

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IMF

Classification: LYASE

Total Structure Weight: 66441.10

Macromolecule Entities
Molecule Chains Length Organism Details
N-acetylneuraminate lyase A, B 293 Pasteurella multocida EC#: 4.1.3.3 IUBMB
Mutation: K164A, P278S
Gene Name(s): nanA PM1715

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SI3
Query on SI3

A, B 5-(acetylamino)-3,5-dideoxy-D-glycero-D-galacto- non-2-ulosonic acid
ketone form, (Synonym)
C11 H19 N O9
KBGAYAKRZNYFFG-BOHATCBPSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ME2
Query on ME2

A, B 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE
C7 H16 O3
CNJRPYFBORAQAU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.167
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 81.71 α = 90.00
b = 150.23 β = 90.00
c = 113.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-02
  • Released Date: 2013-11-06
  • Deposition author(s): Fisher, A.J., Huynh, N.

Revision History

  • 2013-12-11
    Type: Citation | Details: Citation update