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Crystal Structure of BenM_DBD/catB site 1 DNA Complex
DOI:10.2210/pdb4ihs/pdb   NDB ID: NA2173
4IHS
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 74678.16
    Molecule: HTH-type transcriptional regulator BenM
    Polymer: 1 Type: protein Length: 94
    Chains: A, B, C, D
    Fragment: UNP residues 1-87
    Organism: Acinetobacter sp. ADP1
    Gene Names: benM benR ACIAD1435
    UniProtKB: Protein Feature View | Search PDB | O68014  
    Molecule: catB site 1 DNA
    Polymer: 2 Type: dna Length: 25
    Chains: E, G
    Molecule: catB site 1 DNA - complement
    Polymer: 3 Type: dna Length: 25
    Chains: F, H
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Acinetobacter sp.   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3M1E  Crystal Structure of BenM DNA binding domain 
    4IHT   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MLI
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    MLI C3 H2 O4
    MALONATE ION
    MLI:4IHS
    NA
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    NA Na
    SODIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2173
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Alanazi, A.,  Momany, C.,  Neidle, E.L.

    Deposition:   2012-12-19
    Release:   2013-07-10
    Last Modified (REVDAT):   2014-01-15
     
  •   Revision History    Hide
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    2014-01-15
    Citation
    2013-10-02
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.10
    R-Value: 0.179 (obs.)
    R-Free: 0.203
    Space Group: P 42 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 156.49 α = 90.00 
    b = 156.49 β = 90.00 
    c = 141.52 γ = 90.00