4IFW

Crystal structure of Treponema pallidum TP0796 Flavin trafficking protein, ADP inhibited form

Structural Biology Knowledgebase: 4IFW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.177

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IFW

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 37219.11

Macromolecule Entities
Molecule Chains Length Organism Details
Thiamine biosynthesis lipoprotein ApbE A 340 Treponema pallidum EC#: 2.7.1.180 IUBMB
Gene Name(s): apbE TP_0796

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.177
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 116.83 α = 90.00
b = 47.25 β = 102.03
c = 57.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-15
  • Released Date: 2013-02-27
  • Deposition author(s): Tomchick, D.R., Brautigam, C.A., Deka, R.K., Norgard, M.V.

Revision History

  • 2013-05-08
    Type: Citation | Details: Citation update
  • 2013-03-13
    Type: Citation | Details: Citation update
  • 2013-03-06
    Type: Entry title | Details: Update title