4ID7

ACK1 kinase in complex with the inhibitor cis-3-[8-amino-1-(4-phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol

Structural Biology Knowledgebase: 4ID7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4ID7

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 31693.80

Macromolecule Entities
Molecule Chains Length Organism Details
Activated CDC42 kinase 1 A 273 Homo sapiens EC#: 2.7.10.2 IUBMB 2.7.11.1 IUBMB
Fragment: Kinase domain, UNP residues 117-389
Gene Name(s): TNK2 Gene View ACK1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1G0
Query on 1G0

A cis-3-[8-amino-1-(4-phenoxyphenyl)imidazo[1,5- a]pyrazin-3-yl]cyclobutanol
C22 H20 N4 O2
SAFIVUCEBPHLEO-IYBDPMFKSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1G0 IC50: 152.6 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.210
  • Space Group: I 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 94.66 α = 90.00
b = 94.66 β = 90.00
c = 187.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-11
  • Released Date: 2013-01-30
  • Deposition author(s): Jin, M., Wang, J., Kleinberg, A., Kadalbajoo, M., Siu, K., Cooke, A., Bittner, M., Yao, Y., Thelemann, A., Ji, Q., Bhagwat, S., Crew, A.P., Pachter, J., Epstein, D., Mulvihill, M.J.

Revision History

  • 2013-02-13
    Type: Citation | Details: Citation update