4I2Q

Crystal structure of K103N/Y181C mutant of HIV-1 reverse transcriptase in complex with rilpivirine (TMC278) analogue

Structural Biology Knowledgebase: 4I2Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4I2Q

Classification: HYDROLASE TRANSFERASE / INHIBITOR

Total Structure Weight: 114455.49

Macromolecule Entities
Molecule Chains Length Organism Details
Gag-Pol polyprotein A 557 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.13.2 IUBMB 3.1.26.13 IUBMB 3.4.23.16 IUBMB
Fragment: p66 (UNP Residues 600-1154)
Mutation: K103N, K172A, K173A, Y181C, C280S
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Gag-Pol polyprotein B 428 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.13.2 IUBMB 3.1.26.13 IUBMB 3.4.23.16 IUBMB
Fragment: p51 (UNP Residues 600-1077)
Mutation: C280S
Gene Name(s): gag-pol

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1BT
Query on 1BT

A (2E)-3-(4-{[6-(1,3-benzothiazol-5-ylamino)- 9H-purin-2-yl]amino}-3,5-dimethylphenyl)prop- 2-enenitrile
C23 H18 N8 S
FZDPEDQCVGYRLP-ONEGZZNKSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.277
  • R-Value Work: 0.211
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 162.60 α = 90.00
b = 72.95 β = 100.70
c = 108.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-22
  • Released Date: 2013-01-16
  • Deposition author(s): Patel, D., Bauman, J.D., Das, K., Arnold, E.

Revision History

No revisions since initial release