4HY5

Crystal structure of cIAP1 BIR3 bound to T3256336

Structural Biology Knowledgebase: 4HY5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.173

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HY5

Classification: LIGASE / LIGASE INHIBITOR

Total Structure Weight: 27932.01

Macromolecule Entities
Molecule Chains Length Organism Details
Baculoviral IAP repeat-containing protein 2 A, B 115 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: Bir3
Mutation: E235S, R237H, R238H, ΔF244, ΔP245, ΔN246, ΔC247, ΔP248, ΔF249, L240H, E241H, N242S, L244G, T246N, R248Y
Gene Name(s): BIRC2 Gene View API1 IAP2 MIHB RNF48

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1AQ
Query on 1AQ

A, B (3S,7R,8aR)-2-{(2S)-2-(4,4-difluorocyclohexyl)- 2-[(N-methyl-L-alanyl)amino]acetyl}-N-[(4R)- 3,4-dihydro-2H-chromen-4-yl]-7-ethoxyoctahydropyrrolo[1,2- a]pyrazine-3-carboxamide
C31 H45 F2 N5 O5
WQLHYSFOEZZZDD-QAPMSZJWSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1AQ N/A in BindingDB
IC50: 1.3 nM  BindingMOAD
IC50: 1.3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.173
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 31.11 α = 90.00
b = 68.18 β = 90.00
c = 122.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-13
  • Released Date: 2013-01-30
  • Deposition author(s): Dougan, D.R., Snell, G.P.

Revision History

  • 2015-09-09
    Type: Entry authorship | Details: Add missing commas in names
  • 2013-08-07
    Type: Function and keywords | Details: Indicate inhibitor
  • 2013-08-07
    Type: Non-polymer description | Details: Indicate subcomponents for 1AQ
  • 2013-02-27
    Type: Citation | Details: Citation update