4HSG

Crystal structure of human PRMT3 in complex with an allosteric inhibitor (PRMT3- KTD)

Structural Biology Knowledgebase: 4HSG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.192

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HSG

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 38594.58

Macromolecule Entities
Molecule Chains Length Organism Details
PRMT3 protein A 340 Homo sapiens EC#: 2.1.1 IUBMB
Gene Name(s): PRMT3 Gene View HRMT1L3

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
KTD
Query on KTD

A 1-(1,2,3-benzothiadiazol-6-yl)-3-(2-oxo-2- phenylethyl)urea
C15 H12 N4 O2 S
PKHSKYFMULMNOC-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UNX
Query on UNX

A UNKNOWN ATOM OR ION
X
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
KTD IC50: 480 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.192
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 70.70 α = 90.00
b = 70.70 β = 90.00
c = 172.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-30
  • Released Date: 2012-12-05
  • Deposition author(s): Dobrovetsky, E., Dong, A., Liu, F., Li, F., Tempel, W., Siarheyeva, A., Hajian, T., Smil, D., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Schapira, M., Jin, J., Vedadi, M., Structural Genomics Consortium (SGC)

Revision History

No revisions since initial release