4HPE

Crystal structure of a putative cell wall hydrolase (CD630_03720) from Clostridium difficile 630 at 2.38 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 4HPE

Classification: HYDROLASE

Total Structure Weight: 203840.09

Macromolecule Entities
Molecule Chains Length Organism Details
Putative cell wall hydrolase Tn916-like,CTn1-Orf17 A, B, C..., D, E, FA, B, C, D, E, F 308 Clostridioides difficile Fragment: UNP residues 29-335
Gene Name(s): CD630_03720
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D, E, F CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F L-PEPTIDE LINKING C5 H11 N O2 Se MET
OCS
Query on OCS
A, B, C, D, E, F L-PEPTIDE LINKING C3 H7 N O5 S CYS

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 65.52 α = 109.71
b = 101.21 β = 108.86
c = 101.44 γ = 101.36

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-23
  • Released Date: 2012-11-28
  • Deposition author(s): Joint Center for Structural Genomics (JCSG)

Revision History

No revisions since initial release