4HOR

Crystal Structure of Full-Length Human IFIT5 with 5`-triphosphate Oligocytidine

Structural Biology Knowledgebase: 4HOR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.164

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HOR

Classification: rna binding protein / rna

Total Structure Weight: 57599.53


Macromolecule Entities
Molecule Chains Length Organism Details
Interferon-induced protein with tetratricopeptide repeats 5 A 482 Homo sapiens Gene Name(s): IFIT5 Gene View ISG58 RI58
Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*(CTP)P*CP*CP*CP*C)-3') X 5 synthetic 5`-triphosphate oligocytidine

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

X MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CTP
Query on CTP
X NON-POLYMER C9 H16 N3 O14 P3 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.201
  • R-Value Work: 0.164
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.59 α = 90.00
b = 84.90 β = 106.92
c = 61.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-22
  • Released Date: 2013-01-23
  • Deposition author(s): Abbas, Y.M., Pichlmair, A., Gorna, M.W., Superti-Furga, G., Nagar, B.

Revision History

  • 2013-02-27
    Type: Citation | Details: Citation update
  • 2013-02-06
    Type: Citation | Details: Citation update