4HKF

Crystal structure of Danio rerio MEC-17 catalytic domain in complex with acetyl-CoA

Structural Biology Knowledgebase: 4HKF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.145

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HKF

Classification: TRANSFERASE

Total Structure Weight: 22694.09

Macromolecule Entities
Molecule Chains Length Organism Details
Alpha-tubulin N-acetyltransferase A 191 Danio rerio EC#: 2.3.1.108 IUBMB
Fragment: UNP residues 1-184
Gene Name(s): atat1 mec17 si:ch211-152p11.5 zgc:65893
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACO
Query on ACO

A ACETYL COENZYME *A
C23 H38 N7 O17 P3 S
ZSLZBFCDCINBPY-ZSJPKINUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.145
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.63 α = 90.00
b = 65.87 β = 90.00
c = 104.67 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-15
  • Released Date: 2012-12-12
  • Deposition author(s): Li, W., Zhong, C., Sun, B., Xu, S., Zhang, T., Ding, J.

Revision History

No revisions since initial release