4HE7

Crystal Structure of Brazzein

Structural Biology Knowledgebase: 4HE7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.218

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HE7

Classification: PLANT PROTEIN

Total Structure Weight: 6514.34

Macromolecule Entities
Molecule Chains Length Organism Details
Defensin-like protein A 54 Pentadiplandra brazzeana Mutation: Q1X
Gene Name(s):

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
A L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.218
  • Space Group: I 41 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.40 α = 90.00
b = 61.40 β = 90.00
c = 59.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-03
  • Released Date: 2013-03-27
  • Deposition author(s): Nagata, K., Hongo, N., Kameda, Y., Yamamura, A., Sasaki, H., Lee, W.C., Ishikawa, K., Suzuki, E., Tanokura, M.

Revision History

  • 2013-08-07
    Type: Citation | Details: Citation update