Crystal structure of CRM1 inhibitor Anguinomycin A in complex with CRM1-Ran-RanBP1
4HAV
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  •   Molecular Description Hide
    Classification: Protein Transport/antibiotic
    Structure Weight: 159440.23
    Molecule: GTP-binding nuclear protein Ran
    Polymer: 1 Type: protein Length: 216
    Chains: A
    Organism: Homo sapiens
    Gene Names: ARA24 OK/SW-cl.81 Gene View for RAN
    UniProtKB: Search PDB | P62826   Protein Feature View
    Molecule: Ran-specific GTPase-activating protein 1
    Polymer: 2 Type: protein Length: 140
    Chains: B
    Fragment: RanDB1 (UNP residues 62-201)
    Organism: Saccharomyces cerevisiae
    Gene Names: YRB1 CST20 SFO1 YDR002W YD8119.08 Gene View for HTN1
    UniProtKB: Search PDB | P41920   Protein Feature View
    Molecule: Exportin-1
    Polymer: 3 Type: protein Length: 1023
    Chains: C
    Fragment: SEE REMARK 999
    Mutation: T539C,Y1022C
    Organism: Saccharomyces cerevisiae
    Gene Names: CRM1 KAP124 YGR218W G8514 Gene View for XPO1
    UniProtKB: Search PDB | P30822   Protein Feature View
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4GMX    
    4GPT    
    4HAT    
    4HAU    
    4HAW    
    4HAX    
    4HAY    
    4HAZ    
    4HB0    
    4HB2    
    4HB3    
    4HB4    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    AA8
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    AA8 C31 H48 O7
    Anguinomycin A, bound form
    AA8:4HAV
    CL
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    CL Cl
    CHLORIDE ION
    GNP
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    GNP C10 H17 N6 O13 P3
    PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Sun, Q.,  Chook, Y.M.

    Deposition:   2012-09-27
    Release:   2013-01-09
    Last Modified (REVDAT):   2013-02-06
     
  •   Revision History    Hide
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    2013-02-06
    Citation
    2013-01-23
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.00
    R-Value: 0.174 (obs.)
    R-Free: 0.220
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 106.24 α = 90.00 
    b = 106.24 β = 90.00 
    c = 306.39 γ = 90.00