4HA4

Structure of beta-glycosidase from Acidilobus saccharovorans in complex with glycerol

Structural Biology Knowledgebase: 4HA4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.163
  • R-Value Work: 0.130

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HA4

Classification: HYDROLASE

Total Structure Weight: 57500.08

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-galactosidase A 489 Acidilobus saccharovorans EC#: 3.2.1.23 IUBMB
Gene Name(s): ASAC_1390

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG6
Query on PG6

A 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- ETHOXY}-ETHANE
C12 H26 O6
DMDPGPKXQDIQQG-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PG4
Query on PG4

A TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SIN
Query on SIN

A SUCCINIC ACID
C4 H6 O4
KDYFGRWQOYBRFD-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.163
  • R-Value Work: 0.130
  • Space Group: P 42 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.12 α = 90.00
b = 84.12 β = 90.00
c = 166.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-25
  • Released Date: 2012-10-10
  • Deposition author(s): Trofimov, A.A., Polyakov, K.M., Tikhonov, A.V., Bezsudnova, E.Y., Dorovatovskii, P.V., Gumerov, V.M., Ravin, N.V., Skryabin, K.G., Popov, V.O.

Revision History

  • 2013-09-04
    Type: Citation | Details: Citation update