4H2K

Crystal structure of the catalytic domain of succinyl-diaminopimelate desuccinylase from Haemophilus influenzae

Structural Biology Knowledgebase: 4H2K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 4H2K

Classification: hydrolase

Total Structure Weight: 58045.43

Macromolecule Entities
Molecule Chains Length Organism Details
Succinyl-diaminopimelate desuccinylase A, B 269 Haemophilus influenzae EC#: 3.5.1.18 IUBMB
Gene Name(s): dapE HI_0102
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 61.67 α = 90.00
b = 44.72 β = 92.90
c = 92.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-12
  • Released Date: 2012-11-21
  • Deposition author(s): Nocek, B., Jedrzejczak, R., Makowska-Grzyska, M., Starus, A., Holz, R., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2015-08-26
    Type: Citation | Details: Citation update