POP-OUT | CLOSE
 
Crystal structure of the tandem tudor domain and plant homeodomain of UHRF1 with Histone H3K9me3
4GY5
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ligase
    Structure Weight: 115359.66
    Molecule: E3 ubiquitin-protein ligase UHRF1
    Polymer: 1 Type: protein Length: 241
    Chains: A, B, C, D
    EC#: 6.3.2   
    Fragment: Tudor PHD domain, UNP residues 134-366
    Organism: Homo sapiens
    Gene Names: Gene View for UHRF1 ICBP90 NP95 RNF106
    UniProtKB: Protein Feature View | Search PDB | Q96T88  
    Molecule: Peptide from Histone H3.3
    Polymer: 2 Type: protein Length: 17
    Chains: E, F
    Organism: Homo sapiens
    Gene Names: Gene View for H3F3A H3.3A H3F3 PP781 Gene View for H3F3B H3.3B
    UniProtKB: Protein Feature View | Search PDB | P84243  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN
    Search 
    Download 
    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    M3L
    Search 
    M3L C9 H21 N2 O2 LYS lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Cheng, J.,  Yang, Y.,  Fang, J.,  Xiao, J.,  Zhu, T.,  Chen, F.,  Wang, P.,  Xu, Y.

    Deposition:   2012-09-05
    Release:   2012-11-14
    Last Modified (REVDAT):   2013-08-07
     
  •   Revision History    Hide
    Mouse over text for details
    2013-08-07
    Citation
    2012-11-21
    Entry title
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.96
    R-Value: 0.257 (obs.)
    R-Free: 0.288
    Space Group: P 42 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 145.94 α = 90.00 
    b = 145.94 β = 90.00 
    c = 125.90 γ = 90.00