4GTA

T. Maritima FDTS with FAD, dUMP, and Folinic Acid

Structural Biology Knowledgebase: 4GTA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.179
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 4GTA

Classification: TRANSFERASE

Total Structure Weight: 29106.54

Macromolecule Entities
Molecule Chains Length Organism Details
Thymidylate synthase thyX A 232 Thermotoga maritima EC#: 2.1.1.148 IUBMB
Gene Name(s): thyX thy1 TM_0449
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FFO
Query on FFO

A N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8- hexahydropteridin-6-yl]methyl}amino)benzoyl]- L-glutamic acid
[6S]-5-FORMYL-TETRAHYDROFOLATE; 6S-FOLINIC ACID (Synonym)
C20 H23 N7 O7
VVIAGPKUTFNRDU-STQMWFEESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UMP
Query on UMP

A 2'-DEOXYURIDINE 5'-MONOPHOSPHATE
DUMP (Synonym)
C9 H13 N2 O8 P
JSRLJPSBLDHEIO-SHYZEUOFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.179
  • R-Value Work: 0.164
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 110.30 α = 90.00
b = 110.30 β = 90.00
c = 121.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-28
  • Released Date: 2012-10-17
  • Deposition author(s): Mathews, I.I., Lesley, S.A., Kohen, A.

Revision History

No revisions since initial release