4GT9

T. Maritima FDTS with FAD, dUMP and Folate.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.164
  • R-Value Work: 0.152

Literature

Macromolecules
Sequence Display for 4GT9

Classification: TRANSFERASE

Total Structure Weight: 29653.87

Macromolecule Entities
Molecule Chains Length Organism Details
Thymidylate synthase thyX A 232 Thermotoga maritima EC#: 2.1.1.148 IUBMB
Gene Name(s): thyX thy1 TM_0449
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MEF
Query on MEF

A N-({4-[(6aR)-3-amino-1-oxo-1,2,5,6,6a,7-hexahydroimidazo[1,5- f]pteridin-8(9H)-yl]phenyl}carbonyl)-L-glutamic acid
5,10-methylene,5,6,7,8-tetrahydrofolate (Synonym)
C20 H23 N7 O6
QYNUQALWYRSVHF-OLZOCXBDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UMP
Query on UMP

A 2'-DEOXYURIDINE 5'-MONOPHOSPHATE
DUMP (Synonym)
C9 H13 N2 O8 P
JSRLJPSBLDHEIO-SHYZEUOFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.39 Å
  • R-Value Free: 0.164
  • R-Value Work: 0.152
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 110.32 α = 90.00
b = 110.32 β = 90.00
c = 120.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-28
  • Released Date: 2012-10-17
  • Deposition author(s): Mathews, I.I., Lesley, S.A., Kohen, A.

Revision History

No revisions since initial release