4GSJ

Crystal structure of Atg7 NTD K14A F16A D18A mutant

Structural Biology Knowledgebase: 4GSJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.176

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GSJ

Classification: PROTEIN TRANSPORT

Total Structure Weight: 33797.00

Macromolecule Entities
Molecule Chains Length Organism Details
Ubiquitin-like modifier-activating enzyme ATG7 A 291 Saccharomyces cerevisiae Fragment: N-terminal domain (UNP residues 1-289)
Mutation: K14A, F16A, D18A
Gene Name(s): ATG7 Gene View APG7 CVT2 YHR171W

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.176
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.83 α = 90.00
b = 74.63 β = 90.00
c = 76.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-27
  • Released Date: 2012-11-14
  • Deposition author(s): Kaiser, S.E., Mao, K., Taherbhoy, A.M., Yu, S., Olszewski, J.L., Duda, D.M., Kurinov, I., Deng, A., Fenn, T.D., Klionsky, D.J., Schulman, B.A.

Revision History

  • 2012-12-19
    Type: Citation | Details: Citation update
  • 2012-11-28
    Type: Citation | Details: Citation update