4GS6

Irreversible Inhibition of TAK1 Kinase by 5Z-7-Oxozeaenol

Structural Biology Knowledgebase: 4GS6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.222

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GS6

Classification: Transferase / Transferase inhibitor

Total Structure Weight: 36504.26

Macromolecule Entities
Molecule Chains Length Organism Details
Tak1-Tab1 fusion protein A 315 Homo sapiens EC#: 2.7.11.25 IUBMB
Gene Name(s): MAP3K7 Gene View TAK1 TAB1 Gene View MAP3K7IP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1FM
Query on 1FM

A (3S,5Z,8S,9S,11E)-8,9,16-trihydroxy-14-methoxy- 3-methyl-3,4,9,10-tetrahydro-1H-2-benzoxacyclotetradecine- 1,7(8H)-dione
(5Z)-7-Oxozeaenol (Synonym)
C19 H22 O7
NEQZWEXWOFPKOT-BYRRXHGESA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1FM N/A in BindingDB
N/A in BindingMoad
Ki: 71 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.222
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.14 α = 90.00
b = 133.87 β = 90.00
c = 142.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-27
  • Released Date: 2013-01-23
  • Deposition author(s): Larsen, N.A., Ferguson, A.D., Wu, J.

Revision History

  • 2013-03-27
    Type: Citation | Details: Citation update