4GEK

Crystal Structure of wild-type CmoA from E.coli

Structural Biology Knowledgebase: 4GEK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.171

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GEK

Classification: TRANSFERASE

Total Structure Weight: 60262.46

Macromolecule Entities
Molecule Chains Length Organism Details
tRNA (cmo5U34)-methyltransferase A, G 261 Escherichia coli EC#: 2.1.1 IUBMB

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GEK
Query on GEK

A, G (2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin- 9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio]- 2-ammoniobutanoate
CARBOXY-S-ADENOSYLMETHIONINE (Synonym)
C16 H22 N6 O7 S
VFFTYSZNZJBRBG-HEOPWLPUSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, G SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.171
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.31 α = 90.00
b = 78.68 β = 90.00
c = 92.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-02
  • Released Date: 2012-10-10
  • Deposition author(s): Kim, J., Toro, R., Bonanno, J.B., Bhosle, R., Sampathkumar, P., Almo, S.C., New York Structural Genomics Research Consortium (NYSGRC)

Revision History

  • 2013-06-19
    Type: Non-polymer description | Details: --
  • 2013-06-12
    Type: Citation | Details: --
  • 2013-06-12
    Type: Polymer description | Details: --
  • 2013-06-12
    Type: Sequence database correspondence | Details: --
  • 2013-05-29
    Type: Citation | Details: Citation update
  • 2013-05-15
    Type: Citation | Details: Citation update