4G4J

Crystal structure of glucuronoyl esterase S213A mutant from Sporotrichum thermophile in complex with methyl 4-O-methyl-beta-D-glucopyranuronate determined at 2.35 A resolution

Structural Biology Knowledgebase: 4G4J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4G4J

Classification: Hydrolase

Total Structure Weight: 47694.34

Macromolecule Entities
Molecule Chains Length Organism Details
4-O-methyl-glucuronoyl methylesterase A 433 Myceliophthora thermophila EC#: 3.1.1 IUBMB
Mutation: S213A
Gene Name(s): ge2 MYCTH_55568

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MCU
Query on MCU

A methyl 4-O-methyl-beta-D-glucopyranuronate
C8 H14 O7
MKGHDZIEKZPBCZ-ULQPCXBYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.186
  • Space Group: P 21 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.10 α = 90.00
b = 69.77 β = 90.00
c = 103.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-16
  • Released Date: 2013-01-02
  • Deposition author(s): Charavgi, M.D., Dimarogona, M., Topakas, E., Christakopoulos, P., Chrysina, E.D.

Revision History

  • 2013-01-23
    Type: Citation | Details: Citation update