4G2V

Structure complex of LGN binding with FRMPD1

Structural Biology Knowledgebase: 4G2V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 4G2V

Classification: PROTEIN BINDING

Total Structure Weight: 42673.49

Macromolecule Entities
Molecule Chains Length Organism Details
G-protein-signaling modulator 2 A 340 Mus musculus Fragment: TPR domain, UNP residues 22-357
Gene Name(s): Gpsm2 Lgn Pins
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
peptide from FERM and PDZ domain-containing protein 1 B 38 Homo sapiens Fragment: UNP residues 901-938
Gene Name(s): FRMPD1 Gene View FRMD2 KIAA0967
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BTB
Query on BTB

A 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- PROPANE-1,3-DIOL
BIS-TRIS BUFFER (Synonym)
C8 H19 N O5
OWMVSZAMULFTJU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.190
  • Space Group: P 61 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.83 α = 90.00
b = 93.83 β = 90.00
c = 172.86 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-13
  • Released Date: 2013-01-23
  • Deposition author(s): Shang, Y., Pan, Z., Wen, W., Wang, W., Zhang, M.

Revision History

  • 2013-07-17
    Type: Citation | Details: Citation update