4G1P

Structural and Mechanistic Basis of Substrate Recognition by Novel Di-peptidase Dug1p From Saccharomyces cerevisiae

Structural Biology Knowledgebase: 4G1P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 4G1P

Classification: HYDROLASE

Total Structure Weight: 54087.61

Macromolecule Entities
Molecule Chains Length Organism Details
Cys-Gly metallodipeptidase DUG1 A 487 Saccharomyces cerevisiae EC#: 3.4.13 IUBMB
Gene Name(s): DUG1 YFR044C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CYS
Query on CYS

A CYSTEINE
C3 H7 N O2 S
XUJNEKJLAYXESH-REOHCLBHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLY
Query on GLY

A GLYCINE
C2 H5 N O2
DHMQDGOQFOQNFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.186
  • Space Group: P 65 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 119.13 α = 90.00
b = 119.13 β = 90.00
c = 176.30 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-11
  • Released Date: 2013-07-17
  • Deposition author(s): Singh, A.K., Singh, M., Pandya, V.K., Singh, V., Mittal, M., Kumaran, S.

Revision History

  • 2014-09-17
    Type: Other | Details: changed crystallization condition