4G16

Crystal structure of ck1g3 with 2-[(4-{[3-(TRIFLUOROMETHYL)PYRIDIN2-YL]OXY}PHENYL)AMINO]-1H-BENZIMIDAZOLE-6-CARBONITRILE

Structural Biology Knowledgebase: 4G16 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.237

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4G16

Classification: TRANSFERASE / TRANSFERASE inhibitor

Total Structure Weight: 38864.91

Macromolecule Entities
Molecule Chains Length Organism Details
Casein kinase I isoform gamma-3 A 330 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: unp residues 34-362
Gene Name(s): CSNK1G3 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0VM
Query on 0VM

A 2-[(4-{[3-(trifluoromethyl)pyridin-2-yl]oxy}phenyl)amino]- 1H-benzimidazole-6-carbonitrile
C20 H12 F3 N5 O
GAHCTGQCJXQYNK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0VM IC50: 6560 nM (88) BindingDB

IC50: 140 nM  BindingMOAD
IC50: 140 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.237
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.15 α = 90.00
b = 57.15 β = 90.00
c = 223.43 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-10
  • Released Date: 2013-05-22
  • Deposition author(s): Huang., X.

Revision History

No revisions since initial release