4G0Y

Crystal structure of Arabidopsis AGO1 in complex with AMP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 4G0Y

Classification: GENE REGULATION

Total Structure Weight: 16786.38

Macromolecule Entities
Molecule Chains Length Organism Details
Protein argonaute 1 A 147 Arabidopsis thaliana Fragment: MID domain, UNP residues 593-738
Gene Name(s): AGO1 Gene View At1g48410 F11A17.3 T1N15.2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AMP N/A in BindingDB
Kd: 4990000 nM  BindingMOAD
Kd: 4990000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.65 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.180
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 37.29 α = 90.00
b = 60.84 β = 90.00
c = 69.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-10
  • Released Date: 2012-07-25
  • Deposition author(s): Frank, F., Hauver, J., Sonenberg, N., Nagar, B.

Revision History

  • Version 1_0: 2012-07-25

    Type: Initial release

  • Version 1_1: 2012-08-29

    Type: Database references

  • Version 1_2: 2012-09-12

    Type: Database references