4FZB

Structure of thymidylate synthase ThyX complexed to a new inhibitor

Structural Biology Knowledgebase: 4FZB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.211

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FZB

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 437700.84

Macromolecule Entities
Molecule Chains Length Organism Details
Probable thymidylate synthase A, B, C..., D, E, F, G, H, I, J, K, L, M, N, O, PA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P 227 Paramecium bursaria chlorella virus 1 EC#: 2.1.1.148 IUBMB
Gene Name(s): A674R

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, C, E, F, H, I, J, K, M, N, O, P FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
0VJ
Query on 0VJ

A, B, D, E, F, G, H, I, J, K, L, M, N, O, P 2-hydroxy-3-(4-methoxybenzyl)naphthalene- 1,4-dione
C18 H14 O4
DKOJAMITDVVFPR-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A, B, C, D, E, F, G, H, I, K, M, O, P DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.211
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.97 α = 111.65
b = 120.58 β = 91.13
c = 128.25 γ = 90.18

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-06
  • Released Date: 2013-05-22
  • Deposition author(s): Basta, T., Boum, Y., Briffotaux, J., Becker, H.F., Lamarre-Jouenne, I., Lambry, J.C., Skouloubris, S., Liebl, U., van Tilbeurgh, H., Graille, M., Myllylkallio, H.

Revision History

  • 2013-11-06
    Type: Data collection | Details: Correct wavelength