4FYH

Crystal structure of rcl with phospho-triciribine

Structural Biology Knowledgebase: 4FYH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.209

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FYH

Classification: HYDROLASE / INHIBITOR

Total Structure Weight: 70775.44

Macromolecule Entities
Molecule Chains Length Organism Details
Deoxyribonucleoside 5'-monophosphate N-glycosidase A, B, C, D 152 Rattus norvegicus EC#: 3.2.2 IUBMB
Fragment: UNP residues 11-151
Mutation: D69N
Gene Name(s): Dnph1 Rcl

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
TR5
Query on TR5

A, B, C, D 5-methyl-1-(5-O-phosphono-beta-D-ribofuranosyl)- 1,5-dihydro-1,4,5,6,8-pentaazaacenaphthylen- 3-amine
Triciribine phosphate (Synonym)
C13 H17 N6 O7 P
URLYINUFLXOMHP-HTVVRFAVSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TR5 N/A in BindingDB
N/A in BindingMoad
Ki: 14000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.44 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.209
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 92.95 α = 90.00
b = 119.00 β = 90.00
c = 57.77 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-04
  • Released Date: 2013-01-02
  • Deposition author(s): Labesse, G., Padilla, A., Kaminski, P.A.

Revision History

  • 2013-02-20
    Type: Citation | Details: Citation update