Crystal structure of rcl with phospho-triciribine
4FYH
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/inhibitor
    Structure Weight: 70775.44
    Molecule: Deoxyribonucleoside 5'-monophosphate N-glycosidase
    Polymer: 1 Type: protein Length: 152
    Chains: A, B, C, D
    EC#: 3.2.2   
    Fragment: UNP residues 11-151
    Mutation: D69N
    Organism: Rattus norvegicus
    Gene Names: Dnph1 Rcl
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  •   Source Hide
    Polymer: 1
    Scientific Name: Rattus norvegicus   Taxonomy   Common Name: Brown rat,rat,rats Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    2KLH    
    4FYI    
    4FYK    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SO4
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    SO4 O4 S
    SULFATE ION
    TR5
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    TR5 C13 H17 N6 O7 P
    5-methyl-1-(5-O-phosphono-beta-D-ribofuranosyl)- 1,5-dihydro-1,4,5,6,8-pentaazaacenaphthylen- 3-amine
    TR5:4FYH
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    TR5
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    TR5
    N/Ain BindingDB
    N/Ain BindingMoad
    Ki: 14000 nM - data from PDBbind  
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Labesse, G.,  Padilla, A.,  Kaminski, P.A.

    Deposition:   2012-07-04
    Release:   2013-01-02
    Last Modified (REVDAT):   2013-02-20
     
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    2013-02-20
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.44
    R-Value: 0.211 (obs.)
    R-Free: 0.246
    Space Group: P 21 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 92.95 α = 90.00 
    b = 119.00 β = 90.00 
    c = 57.77 γ = 90.00