4FP8

Crystal structure of broadly neutralizing antibody C05 bound to H3 influenza hemagglutinin, HA1 subunit


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 4FP8

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 319699.44

Macromolecule Entities
Molecule Chains Length Organism Details
Hemagglutinin HA1 chain A, B, C, D 278 Influenza a virus Fragment: UNP residues 59-325
Gene Name(s): HA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Antibody C05, heavy chain H, I, J, K 241 Homo sapiens Fragment: Fab
Antibody C05, light chain L, M, N, O 214 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, C, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

H, J, L, M, N, O ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
H, I, J, K L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.212
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 90.79 α = 90.00
b = 247.72 β = 91.33
c = 95.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-21
  • Released Date: 2012-09-19
  • Deposition author(s): Ekiert, D.C., Wilson, I.A.

Revision History

  • 2012-10-03
    Type: Database references
  • 2012-10-10
    Type: Database references