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Structure of the PilZ-FimX(EAL domain)-c-di-GMP complex responsible for the regulation of bacterial Type IV pilus biogenesis
4FOU
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Protein Binding/membrane Protein
    Structure Weight: 85889.75
    Molecule: FimX
    Polymer: 1 Type: protein Length: 264
    Chains: A, B
    Fragment: EAL domain (UNP residues 426-689)
    Organism: Xanthomonas axonopodis pv. citri str. 306
    Gene Name: XAC2398
    UniProtKB: Protein Feature View | Search PDB | Q8PJX9  
    Molecule: Type IV fimbriae assembly protein
    Polymer: 2 Type: protein Length: 117
    Chains: C, D
    Organism: Xanthomonas axonopodis pv. citri str. 306
    Gene Names: pilZ XAC1133
    UniProtKB: Protein Feature View | Search PDB | Q8PND9  
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Xanthomonas axonopodis pv. citri   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Xanthomonas axonopodis pv. citri   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3CNR  Xanthomonas axonopodis pv citri PilZ (XAC1133) 
    4FOJ  1.55 A crystal Structure of Xanthomonas citri FimX EAL domain in complex with c-diGMP 
    4FOK  1.8 A crystal structure of the FimX EAL domain in complex with c-diGMP 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    C2E
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    C2E C20 H24 N10 O14 P2
    9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)- 3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro- 2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine- 2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin- 6-one)
    C2E:4FOU
    CA
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    CA Ca
    CALCIUM ION
    GOL
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    GOL C3 H8 O3
    GLYCEROL
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Farah, C.S.,  Guzzo, C.R.

    Deposition:   2012-06-21
    Release:   2013-03-27
    Last Modified (REVDAT):   2013-06-12
     
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    2013-06-12
    Citation
    2013-04-03
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.10
    R-Value: 0.189 (obs.)
    R-Free: 0.238
    Space Group: P 65
    Unit Cell:
      Length [Å] Angles [°]
    a = 126.79 α = 90.00 
    b = 126.79 β = 90.00 
    c = 107.32 γ = 120.00