4FHA

Structure of Dihydrodipicolinate Synthase from Streptococcus pneumoniae,bound to pyruvate and lysine

Structural Biology Knowledgebase: 4FHA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.159

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FHA

Classification: LYASE

Total Structure Weight: 68372.37

Macromolecule Entities
Molecule Chains Length Organism Details
Dihydrodipicolinate synthase A, B 311 Streptococcus pneumoniae EC#: 4.3.3.7 IUBMB

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LYS
Query on LYS

A, B LYSINE
C6 H15 N2 O2
KDXKERNSBIXSRK-YFKPBYRVSA-O
Ligand Explorer
 
JSmol
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
KPI
Query on KPI
A, B L-peptide linking C9 H16 N2 O4 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.159
  • Space Group: P 2 21 21

Unit Cell:

Length (Å) Angle (°)
a = 60.38 α = 90.00
b = 106.37 β = 90.00
c = 106.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-06
  • Released Date: 2013-09-18
  • Deposition author(s): Perugini, M.A., Dogovski, C., Parker, M.W., Gorman, M.A.

Revision History

No revisions since initial release