POP-OUT | CLOSE
 
Y-family DNA polymerase chimera Dbh-Dpo4-Dpo4 #2
DOI:10.2210/pdb4f4x/pdb   NDB ID: NA1802
4F4X
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 51831.29
    Molecule: DNA polymerase IV
    Polymer: 1 Type: protein Length: 361
    Chains: A
    EC#: 2.7.7.7   
    Organism: Sulfolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639
    Gene Names: dbh Saci_0554 dpo4 SSO2448
    UniProtKB: Protein Feature View | Search PDB | Q4JB80  

    UniProtKB: Protein Feature View | Search PDB | Q97W02  
    Molecule: DNA (5'-D(*GP*GP*CP*AP*CP*TP*GP*AP*TP*CP*GP*GP*GP*C)-3')
    Polymer: 2 Type: dna Length: 14
    Chains: P
    Details: Primer DNA
    Molecule: DNA (5'-D(*TP*TP*AP*CP*GP*CP*CP*CP*TP*GP*AP*TP*CP*AP*GP*TP*GP*CP*C)-3')
    Polymer: 3 Type: dna Length: 19
    Chains: T
    Details: Template DNA
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Sulfolobus acidocaldarius, sulfolobus solfataricus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4F4W   
    4F4Y   
    4F4Z   
    4F50   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
    Search 
    Download 
    CA Ca
    CALCIUM ION
    DCP
    Search 
    Download 
    DCP C9 H16 N3 O13 P3
    2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE
    DCP:4F4X
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1802
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Pata, J.D.,  Wilson, R.C.

    Deposition:   2012-05-11
    Release:   2013-01-02
    Last Modified (REVDAT):   2013-02-13
     
  •   Revision History    Hide
    Mouse over text for details
    2013-02-13
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.05
    R-Value: 0.220 (obs.)
    R-Free: 0.250
    Space Group: P 21 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 101.12 α = 90.00 
    b = 102.31 β = 90.00 
    c = 52.88 γ = 90.00