4F4P

SYK in COMPLEX WITH LIGAND LASW836

Structural Biology Knowledgebase: 4F4P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.238

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4F4P

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 32089.18

Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosine-protein kinase SYK A 273 Homo sapiens EC#: 2.7.10.2 IUBMB
Gene Name(s): SYK Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0SB
Query on 0SB

A N-{6-[3-(piperazin-1-yl)phenyl]pyridin-2- yl}-4-(trifluoromethyl)pyridin-2-amine
C21 H20 F3 N5
FCPDILGNMHIWJE-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0SB N/A in BindingDB
IC50: 0.6 nM  BindingMOAD
IC50: 0.6 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.238
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 39.50 α = 90.00
b = 84.23 β = 90.00
c = 89.82 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-11
  • Released Date: 2012-12-12
  • Deposition author(s): Lopez, M., Segarra, V., Vidal, B., Wenzkowski, C., Jestel, A., Krapp, S., Blaesse, M., Nagel, S, Schreiner, P.

Revision History

No revisions since initial release