4F1K

Crystal structure of the MG2+ free VWA domain of plasmodium falciparum trap protein

Structural Biology Knowledgebase: 4F1K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4F1K

Classification: CELL ADHESION

Total Structure Weight: 46986.94

Macromolecule Entities
Molecule Chains Length Organism Details
Thrombospondin related anonymous protein A, B 203 Plasmodium falciparum Gene Name(s): TRAP

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.188
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 89.43 α = 90.00
b = 89.43 β = 90.00
c = 104.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-07
  • Released Date: 2013-01-30
  • Deposition author(s): Pihlajamaa, T., Knuuti, J., Kajander, T., Sharma, A., Permi, P.

Revision History

  • 2013-05-22
    Type: Citation | Details: Citation update