4EVX

Crystal structure of putative phage endolysin from S. enterica

PDB DOI: https://doi.org/10.2210/pdb4EVX/pdb

Classification: Structural Genomics, Unknown Function
Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2012-04-26 Released: 2012-05-23
Deposition Author(s): Michalska, K., Li, H., Jedrzejczak, R., Brown, R.N., Cort, J.R., Heffron, F., Nakayasu, E.S., Adkins, J.N., Joachimiak, A., Program for the Characterization of Secreted Effector Proteins (PCSEP), Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.215
R-Value Work: 0.195
R-Value Observed: 0.196

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of putative phage endolysin from S. enterica

Michalska, K., Jedrzejczak, R., Li, H., Brown, R.N., Cort, J.R., Heffron, F., Nakayasu, E.S., Adkins, J.N., Joachimiak, A., Program for the Characterization of Secreted Effector Proteins (PCSEP), Midwest Center for Structural Genomics (MCSG)

To be published.

Macromolecule Content

Total Structure Weight: 24.52 kDa
Atom Count: 1,699
Modelled Residue Count: 191
Deposited Residue Count: 212
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative phage endolysin	A, B	106	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	Mutation(s): 0 Gene Names: STM3605
UniProt
Find proteins for Q8ZLC6 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore Q8ZLC6 Go to UniProtKB: Q8ZLC6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8ZLC6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 3 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
CSO Query on CSO	A, B	L-PEPTIDE LINKING	C₃ H₇ N O₃ S		CYS
MLY Query on MLY	A, B	L-PEPTIDE LINKING	C₈ H₁₈ N₂ O₂		LYS
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.215
R-Value Work: 0.195
R-Value Observed: 0.196
Space Group: P 6₁ 2 2
Diffraction Data: https://doi.org/10.18430/M34EVX

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.4	α = 90
b = 54.4	β = 90
c = 261.09	γ = 120

Software Package:

Software Name	Purpose
SBC-Collect	data collection
SHELX	model building
MLPHARE	phasing
DM	model building
ARP/wARP	model building
Coot	model building
BUSTER	refinement
HKL-3000	data reduction
HKL-3000	data scaling
SHELX	phasing
DM	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2012-05-23

Deposition Author(s):

Jedrzejczak, R.

Program for the Characterization of Secreted Effector Proteins (PCSEP)

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2012-05-23
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.