4E67

The structure of the polo-box domain (PBD) of polo-like kinase 1 (Plk1) in complex with hydrocinnamoyl-derivatized PLHSpTA peptide

Structural Biology Knowledgebase: 4E67 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.216

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4E67

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 27591.54

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase PLK1 A 232 Homo sapiens EC#: 2.7.11.21 IUBMB
Fragment: Polo box domain (PBD), residues 371-594
Gene Name(s): PLK1 Gene View PLK
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
hydrocinnamoyl-derivatized PLHSpTA peptide B 8 synthetic

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000807 (SER,ALA,HCI,TPO,PRO,LEU,HIS,NH2) B hydrocinnamoyl-derivatized PLHSpTA peptide Peptide-like /
Enzyme inhibitor
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.216
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 35.49 α = 90.00
b = 50.91 β = 101.01
c = 57.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-15
  • Released Date: 2012-10-10
  • Deposition author(s): Sledz, P., Hyvonen, M., Tan, Y.S., Lang, S., Spring, D., Abell, C., Best, R.B.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info