4E5Y

Structure of human FX protein, the key enzyme in the biosynthesis of GDP-L-fucose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.232

Literature

Macromolecules
Sequence Display for 4E5Y

Classification: OXIDOREDUCTASE

Total Structure Weight: 146724.05

Macromolecule Entities
Molecule Chains Length Organism Details
GDP-L-fucose synthase A, B, C, D 321 Homo sapiens EC#: 1.1.1.271 IUBMB
Gene Name(s): TSTA3 Gene View SDR4E1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B, C, D NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.37 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.232
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 85.77 α = 90.00
b = 136.44 β = 90.00
c = 139.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-15
  • Released Date: 2013-04-17
  • Deposition author(s): Zhou, H., He, J.H.

Revision History

  • Version 1_0: 2013-04-17

    Type: Initial release