4E4K

Crystal Structure of PPARgamma with the ligand JO21

Structural Biology Knowledgebase: 4E4K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.335
  • R-Value Work: 0.265

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4E4K

Classification: TRANSCRIPTION

Total Structure Weight: 66109.11

Macromolecule Entities
Molecule Chains Length Organism Details
Peroxisome proliferator-activated receptor gamma A, B 287 Homo sapiens Fragment: Ligand binding domain (UNP residues 223-505)
Gene Name(s): PPARG Gene View NR1C3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RRG
Query on RRG

A (2S)-3-phenyl-2-{[2'-(propan-2-yl)biphenyl- 4-yl]oxy}propanoic acid
C24 H24 O3
LGZFNUULAZCXCA-QHCPKHFHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RRG EC50: 1000 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.335
  • R-Value Work: 0.265
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.01 α = 90.00
b = 62.12 β = 102.42
c = 118.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-13
  • Released Date: 2013-01-23
  • Deposition author(s): Pochetti, G., Montanari, R., Loiodice, F., Fracchiolla, G., Laghezza, A., Carbonara, G., Piemontese, L., Lavecchia, A., Novellino, E.

Revision History

No revisions since initial release