4DW6

Novel N-phenyl-phenoxyacetamide derivatives as potential EthR inhibitors and ethionamide boosters. Discovery and optimization using High-Throughput Synthesis.

Structural Biology Knowledgebase: 4DW6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.184

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DW6

Classification: TRANSCRIPTION / INHIBITOR

Total Structure Weight: 26638.04

Macromolecule Entities
Molecule Chains Length Organism Details
HTH-type transcriptional regulator EthR A 236 Mycobacterium tuberculosis Gene Name(s): ethR etaR Rv3855
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0MN
Query on 0MN

A N-[4-(1,3-benzothiazol-2-yl)phenyl]-2-(3- methoxyphenoxy)acetamide
C22 H18 N2 O3 S
FYJKPCFYYJGKDO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NH4
Query on NH4

A AMMONIUM ION
H4 N
QGZKDVFQNNGYKY-UHFFFAOYSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0MN EC50: 210 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.184
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 121.41 α = 90.00
b = 121.41 β = 90.00
c = 33.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-24
  • Released Date: 2013-03-27
  • Deposition author(s): Flipo, M., Willand, N., Lecat-Guillet, N., Hounsou, C., Desroses, M., Leroux, F., Lens, Z., Villeret, V., Wohlkonig, A., Wintjens, R., Christophe, T., Jeon, H.K., Locht, C., Brodin, P., Baulard, A.R., Deprez, B.

Revision History

  • 2013-08-07
    Type: Citation | Details: Citation update