4DVN

Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with 2'-UMP

Structural Biology Knowledgebase: 4DVN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.195

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DVN

Classification: VIRAL PROTEIN

Total Structure Weight: 43919.10

Macromolecule Entities
Molecule Chains Length Organism Details
E(rns) glycoprotein A, B 167 Bovine viral diarrhea virus 1 Fragment: N-terminal fragment

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BMA
Query on BMA

A, B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
JSmol
MAN
Query on MAN

A, B ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
U2P
Query on U2P

A, B PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO- 2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL- TETRAHYDRO-FURAN-3-YL] ESTER
URIDINE-2'-PHOSPHATE; 2'-URIDINEMONOPHOSPHATE (Synonym)
C9 H13 N2 O9 P
HQIDPEYTETUCNF-XVFCMESISA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.219
  • R-Value Work: 0.195
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.79 α = 90.00
b = 106.55 β = 90.00
c = 63.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-23
  • Released Date: 2012-05-23
  • Deposition author(s): Krey, T., Bontems, F., Vonrhein, C., Vaney, M.-C., Bricogne, G., Ruemenapf, T., Rey, F.A.

Revision History

No revisions since initial release