4DSZ

Crystal Structure of DPP-IV with Compound C2

Structural Biology Knowledgebase: 4DSZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DSZ

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 169647.50

Macromolecule Entities
Molecule Chains Length Organism Details
Dipeptidyl peptidase 4 A, B 728 Homo sapiens EC#: 3.4.14.5 IUBMB
Fragment: extracellular domain (residues 39-766)
Gene Name(s): DPP4 Gene View ADCP2 CD26

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DC3
Query on DC3

A, B (2R)-4-[4-(3-methylphenyl)-1H-1,2,3-triazol- 1-yl]-1-(2,4,5-trifluorophenyl)butan-2-amine
C19 H19 F3 N4
BNUZDHPPDRXKCH-HNNXBMFYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.190
  • Space Group: P 32
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.55 α = 90.00
b = 79.55 β = 90.00
c = 290.41 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-20
  • Released Date: 2013-02-27
  • Deposition author(s): Xiong, B., Zhu, L.R., Chen, D.Q., Zhao, Y.L., Jiang, F., Shen, J.K.

Revision History

No revisions since initial release