4DQJ

Structural Investigation of Bacteriophage Phi6 Lysin (in complex with chitotetraose)

Structural Biology Knowledgebase: 4DQJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.23 Å
  • R-Value Free: 0.170
  • R-Value Work: 0.150

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DQJ

Classification: hydrolase

Total Structure Weight: 40046.02

Macromolecule Entities
Molecule Chains Length Organism Details
Membrane protein Phi6 P5 A, B 173 Pseudomonas phage phi6 Fragment: UNP residues 48-220
Mutation: V207F
Gene Name(s): p5a P5a

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AES
Query on AES

A 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE
AEBSF (Synonym)
C8 H10 F N O2 S
MGSKVZWGBWPBTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.23 Å
  • R-Value Free: 0.170
  • R-Value Work: 0.150
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 43.82 α = 90.00
b = 50.94 β = 103.48
c = 65.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-16
  • Released Date: 2013-01-02
  • Deposition author(s): Dessau, M.A., Modis, Y.

Revision History

No revisions since initial release