4DOU

Crystal Structure of a Single-chain Trimer of Human Adiponectin Globular Domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 4DOU

Classification: HORMONE

Total Structure Weight: 51548.90

Macromolecule Entities
Molecule Chains Length Organism Details
Adiponectin A 442 Homo sapiens Fragment: unp residues 104-244
Gene Name(s): ADIPOQ Gene View ACDC ACRP30 APM1 GBP28
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.200
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 48.31 α = 117.23
b = 49.63 β = 101.68
c = 50.46 γ = 105.31

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-10
  • Released Date: 2012-02-29
  • Deposition author(s): Min, X., Walker, N.P., Wang, Z.

Revision History

  • Version 1_0: 2012-02-29

    Type: Initial release

  • Version 1_1: 2012-05-02

    Type: Database references

  • Version 1_2: 2017-05-31

    Type: Structure summary