4DIF

Structure of A1-type ketoreductase

Structural Biology Knowledgebase: 4DIF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.52 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DIF

Classification: OXIDOREDUCTASE

Total Structure Weight: 104541.63

Macromolecule Entities
Molecule Chains Length Organism Details
AmphB A, B 496 Streptomyces nodosus EC#: 1.1.1.100 IUBMB
Fragment: ketoreductase domain (UNP Residues 2529-3003)
Mutation: G355T, Q364H
Gene Name(s): amphB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.52 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.198
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.55 α = 72.92
b = 63.72 β = 67.22
c = 71.98 γ = 89.74

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-30
  • Released Date: 2013-02-13
  • Deposition author(s): Zheng, J., Keatinge-Clay, A.T.

Revision History

No revisions since initial release