4DHV

Crystal structure of the Pyrococcus furiosus ferredoxin D14C variant containing the heterometallic [AgFe3S4] cluster

Structural Biology Knowledgebase: 4DHV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 4DHV

Classification: ELECTRON TRANSPORT

Total Structure Weight: 15769.95

Macromolecule Entities
Molecule Chains Length Organism Details
Ferredoxin A, B 66 Pyrococcus furiosus Mutation: D14C
Gene Name(s): fdxA PF1909
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0KA
Query on 0KA

A, B SILVER/IRON/SULFUR CLUSTER
Ag Fe3 S4
FVQUTMRPEYETPT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NCO
Query on NCO

A, B COBALT HEXAMMINE(III)
Co H18 N6
DYLMFCCYOUSRTK-FGTKAUEHAT
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.188
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.11 α = 90.00
b = 49.33 β = 90.00
c = 54.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-30
  • Released Date: 2013-01-16
  • Deposition author(s): Jakab-Simon, I.N., Christensen, H.E.M., Haahr, L.T.

Revision History

  • 2013-03-06
    Type: Citation | Details: Citation update
  • 2013-02-06
    Type: Citation | Details: Citation update