4D8H

Crystal structure of Symfoil-4P/PV2: de novo designed beta-trefoil architecture with symmetric primary structure, primitive version 2 (6xLeu / PV1)

Structural Biology Knowledgebase: 4D8H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.165

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4D8H

Classification: DE NOVO PROTEIN

Total Structure Weight: 14540.90

Macromolecule Entities
Molecule Chains Length Organism Details
de novo protein A 132 Synthetic construct Details: F22L/F44L/F64L/F85L/F108L/F132L hisSymfoil-4P/PV1 (6xLeu PV1) de novo designed beta-trefoil architecture with symmetric primary structure enriched for pre-biotic amino acids

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.165
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 46.58 α = 90.00
b = 48.70 β = 90.00
c = 64.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-10
  • Released Date: 2013-01-16
  • Deposition author(s): Blaber, M., Longo, L.

Revision History

  • 2013-12-18
    Type: Entry title | Details: --
  • 2013-05-22
    Type: Citation | Details: Citation update
  • 2013-02-06
    Type: Citation | Details: Citation update