4D5Y

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.0 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 4D5Y

Classification: RIBOSOME

Total Structure Weight: 2578728.25


Macromolecule Entities
Molecule Chains Length Organism Details
60S RIBOSOMAL PROTEIN UL2 A 257 Oryctolagus cuniculus Gene Name(s): RPL8 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
60S RIBOSOMAL PROTEIN UL3 B 403 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL4 C 427 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL18 D 297 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL6 E 288 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL30 F 248 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL8 G 266 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL6 H 192 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL16 I 214 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL5 J 178 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL13 L 211 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL14 M 215 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL15 N 204 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL13 O 203 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL22 P 184 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL18 Q 188 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL19 R 196 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL20 S 176 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL21 T 160 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL22 U 128 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL14 V 140 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL24 W 157 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL23 X 156 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL24 Y 145 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL27 Z 136 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL15 a 148 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL29 b 159 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL30 c 115 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL31 d 125 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL32 e 135 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL33 f 110 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL34 g 117 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL29 h 123 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL36 i 105 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL37 j 97 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL38 k 70 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL39 l 51 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL40 m 128 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL41 n 25 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL44 o 106 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL43 p 92 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN EL28 t 137 Oryctolagus cuniculus
60S RIBOSOMAL PROTEIN UL1 u 210 Oryctolagus cuniculus
Macromolecule Entities
Molecule Chains Length Organism Details
28S Ribosomal RNA 2 5025 Oryctolagus cuniculus
5.8S Ribosomal RNA 3 194 Oryctolagus cuniculus
5S Ribosomal RNA 4 119 Oryctolagus cuniculus


Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 9.0 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2014-11-07
  • Released Date: 2015-03-04
  • Deposition author(s): Muhs, M., Hilal, T., Mielke, T., Skabkin, M.A., Sanbonmatsu, K.Y., Pestova, T.V., Spahn, C.M.T.

Revision History

  • Version 1_0: 2015-03-04

    Type: Initial release

  • Version 1_1: 2016-05-25

    Type: Source and taxonomy

  • Version 2_0: 2017-08-23

    Type: Atomic model, Data collection, Derived calculations