Crystal structure of the Bombyx mori Vasa helicase (E339Q) in complex with RNA and AMPPNP
DOI:10.2210/pdb4d25/pdb   NDB ID: NA3034
4D25
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 50628.39
    Molecule: BMVLG PROTEIN
    Polymer: 1 Type: protein Length: 434
    Chains: A
    Fragment: HELICASE, RESIDUES 135-564
    Mutation: YES
    Organism: Bombyx mori
    Gene Name: BmVLG
    UniProtKB: Search PDB | O01378   Protein Feature View
    Molecule: 5'-R(*UP*GP*AP*CP*AP*UP)-3'
    Polymer: 2 Type: rna Length: 6
    Chains: D
    Organism: Bombyx mori
     
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  •   Source Hide
    Polymer: 1
    Scientific Name: Bombyx mori   Taxonomy   Common Name: Domestic silkworm Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Bombyx mori)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4D26   CRYSTAL STRUCTURE OF THE BOMBYX MORI VASA HELICASE (E339Q) IN COMPLEX WITH RNA,ADP AND PI 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ANP
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    ANP C10 H17 N6 O12 P3
    PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
    GOL
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    GOL C3 H8 O3
    GLYCEROL
    MG
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    MG Mg
    MAGNESIUM ION
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA3034
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Spinelli, P.,  Pillai, R.S.,  Kadlec, J.,  Cusack, S.

    Deposition:   2014-05-07
    Release:   2014-06-18
    Last Modified (REVDAT):   2014-07-02
     
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    2014-07-02
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.90
    R-Value: 0.173 (obs.)
    R-Free: 0.208
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 52.48 α = 90.00 
    b = 78.57 β = 90.00 
    c = 104.58 γ = 90.00