4D02

The crystallographic structure of Flavorubredoxin from Escherichia coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Observed: 0.141

Literature

Macromolecules
Sequence Display for 4D02

Classification: ELECTRON TRANSPORT

Total Structure Weight: 55322.61

Macromolecule Entities
Molecule Chains Length Organism Details
ANAEROBIC NITRIC OXIDE REDUCTASE FLAVORUBREDOXIN A 479 Escherichia coli Fragment: B-LACTAMASE FLAVODOXIN DOMAIN, RESIDUES 1-479
Gene Name(s): norV flrD ygaI ygaJ ygaK b2710 JW2680
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
O
Query on O

A OXYGEN ATOM
O
XLYOFNOQVPJJNP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Observed: 0.141
  • Space Group: P 6 2 2

Unit Cell:

Length (Å) Angle (°)
a = 149.53 α = 90.00
b = 149.53 β = 90.00
c = 94.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-04-23
  • Released Date: 2014-09-03
  • Deposition author(s): Romao, C.V., Vicente, J.B., Bandeiras, T., Carrondo, M.A., Teixeira, M., Frazao, C.

Revision History

  • 2017-02-08
    Type: Citation | Details: JRNL
  • 2014-10-22
    Type: Citation | Details: JRNL